SRP002535

See detailed project information

   Project:  SRP002535
   Organism:  Homo sapiens
   Study Title:  Single Cell Tumor Progression
   Center Name:  COLD SPRING HARBOR LABORATORY
   Description:  Tumor progression studied by analyzing genome-wide copy number in 100 single cells
   Cell Type:  Breast cancer and liver cancer
   Median Sequencing Depth:  0.204361
   Publication:  Punctuated copy number evolution and clonal stasis in triple-negative breast cancer
   DOI:  10.1038/ng.3641

See including samples and runs (Click accession number in the table to see sample/run information)

   Number of samples:  3
   Number of runs:  200
   Number of single cell runs:  200
   
IDProject AccessionSample AccessionRun AccessionRaw DepthGenerated FASTQ Files
(Copy ftp address to download)		SRA Files
(Copy ftp address to download)
1SRP002535SAMN00014736SRR0520470.1006161360ftp.sra.ebi.ac.uk/vol1/fastq/SRR052/SRR052047/SRR052047.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR052/SRR052047
2SRP002535SAMN00014736SRR0521480.1651498580ftp.sra.ebi.ac.uk/vol1/fastq/SRR052/SRR052148/SRR052148.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR052/SRR052148
3SRP002535SAMN00014736SRR0534370.1230061500ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053437/SRR053437.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053437
4SRP002535SAMN00014736SRR0536000.1162408520ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053600/SRR053600.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053600
5SRP002535SAMN00014736SRR0536020.1297097600ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053602/SRR053602.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053602
6SRP002535SAMN00014736SRR0536040.1765280780ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053604/SRR053604.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053604
7SRP002535SAMN00014736SRR0536050.1287841020ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053605/SRR053605.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053605
8SRP002535SAMN00014736SRR0536060.0725865900ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053606/SRR053606.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053606
9SRP002535SAMN00014736SRR0536070.0915681510ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053607/SRR053607.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053607
10SRP002535SAMN00014736SRR0536080.1067416870ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053608/SRR053608.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053608
11SRP002535SAMN00014736SRR0536090.1269087570ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053609/SRR053609.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053609
12SRP002535SAMN00014736SRR0536100.1089446330ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053610/SRR053610.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053610
13SRP002535SAMN00014736SRR0536110.1197892730ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053611/SRR053611.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053611
14SRP002535SAMN00014736SRR0536150.0887302350ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053615/SRR053615.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053615
15SRP002535SAMN00014736SRR0536160.0990471380ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053616/SRR053616.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053616
16SRP002535SAMN00014736SRR0536170.1234223590ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053617/SRR053617.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053617
17SRP002535SAMN00014736SRR0536180.1159672260ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053618/SRR053618.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053618
18SRP002535SAMN00014736SRR0536190.0918102980ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053619/SRR053619.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053619
19SRP002535SAMN00014736SRR0536200.2006669210ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053620/SRR053620.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053620
20SRP002535SAMN00014736SRR0536230.1863283600ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053623/SRR053623.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053623
21SRP002535SAMN00014736SRR0536240.2079027970ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053624/SRR053624.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053624
22SRP002535SAMN00014736SRR0536290.1752486720ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053629/SRR053629.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053629
23SRP002535SAMN00014736SRR0536300.1251647910ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053630/SRR053630.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053630
24SRP002535SAMN00014736SRR0536310.1739040000ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053631/SRR053631.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053631
25SRP002535SAMN00014736SRR0536320.1927222640ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053632/SRR053632.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053632
26SRP002535SAMN00014736SRR0536330.2205831970ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053633/SRR053633.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053633
27SRP002535SAMN00014736SRR0536340.2394735630ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053634/SRR053634.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053634
28SRP002535SAMN00014736SRR0536350.1938379650ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053635/SRR053635.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053635
29SRP002535SAMN00014736SRR0536360.1633277420ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053636/SRR053636.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053636
30SRP002535SAMN00014736SRR0536370.1309517420ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053637/SRR053637.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053637
31SRP002535SAMN00014736SRR0536380.0710676080ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053638/SRR053638.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053638
32SRP002535SAMN00014736SRR0536390.2125170050ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053639/SRR053639.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053639
33SRP002535SAMN00014736SRR0536660.2110790360ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053666/SRR053666.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053666
34SRP002535SAMN00014736SRR0536670.2032226070ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053667/SRR053667.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053667
35SRP002535SAMN00014736SRR0536680.1166490570ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053668/SRR053668.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053668
36SRP002535SAMN00014736SRR0536690.0858243510ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053669/SRR053669.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053669
37SRP002535SAMN00014736SRR0536700.1449029870ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053670/SRR053670.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053670
38SRP002535SAMN00014736SRR0536710.1564602800ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053671/SRR053671.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053671
39SRP002535SAMN00014736SRR0536720.1061108950ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053672/SRR053672.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053672
40SRP002535SAMN00014736SRR0536730.0842655190ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053673/SRR053673.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053673
41SRP002535SAMN00014736SRR0536740.1283504950ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053674/SRR053674.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053674
42SRP002535SAMN00014736SRR0536750.1215380600ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053675/SRR053675.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053675
43SRP002535SAMN00014736SRR0536760.0546053760ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053676/SRR053676.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053676
44SRP002535SAMN00014736SRR0536770.1110174700ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053677/SRR053677.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053677
45SRP002535SAMN00014736SRR0536780.1203252930ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053678/SRR053678.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053678
46SRP002535SAMN00014736SRR0536790.1201628000ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053679/SRR053679.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053679
47SRP002535SAMN00014736SRR0536800.1049229170ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053680/SRR053680.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053680
48SRP002535SAMN00014736SRR0536810.1229162120ftp.sra.ebi.ac.uk/vol1/fastq/SRR053/SRR053681/SRR053681.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR053/SRR053681
49SRP002535SAMN00014736SRR0542130.1085199810ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054213/SRR054213.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054213
50SRP002535SAMN00014736SRR0545650.1962794500ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054565/SRR054565.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054565
51SRP002535SAMN00014736SRR0545660.1963425100ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054566/SRR054566.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054566
52SRP002535SAMN00014736SRR0545670.2112133370ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054567/SRR054567.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054567
53SRP002535SAMN00014736SRR0545680.2109014830ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054568/SRR054568.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054568
54SRP002535SAMN00014736SRR0545690.2299574100ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054569/SRR054569.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054569
55SRP002535SAMN00014736SRR0545700.1894768300ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054570/SRR054570.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054570
56SRP002535SAMN00014736SRR0545710.2074902980ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054571/SRR054571.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054571
57SRP002535SAMN00014736SRR0545720.2033796230ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054572/SRR054572.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054572
58SRP002535SAMN00014736SRR0545730.1433610570ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054573/SRR054573.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054573
59SRP002535SAMN00014736SRR0545740.1472356180ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054574/SRR054574.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054574
60SRP002535SAMN00014736SRR0545750.1431358250ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054575/SRR054575.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054575
61SRP002535SAMN00014736SRR0545760.1327347830ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054576/SRR054576.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054576
62SRP002535SAMN00014736SRR0545770.1155790630ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054577/SRR054577.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054577
63SRP002535SAMN00014736SRR0545780.1441493020ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054578/SRR054578.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054578
64SRP002535SAMN00014736SRR0545920.1065549900ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054592/SRR054592.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054592
65SRP002535SAMN00014736SRR0545940.0398170520ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054594/SRR054594.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054594
66SRP002535SAMN00014736SRR0545960.0656681920ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054596/SRR054596.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054596
67SRP002535SAMN00014736SRR0545970.0476354130ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054597/SRR054597.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054597
68SRP002535SAMN00014736SRR0545980.0458273790ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054598/SRR054598.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054598
69SRP002535SAMN00014736SRR0545990.0440003000ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054599/SRR054599.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054599
70SRP002535SAMN00014736SRR0546000.1211543370ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054600/SRR054600.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054600
71SRP002535SAMN00014736SRR0546010.1241743060ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054601/SRR054601.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054601
72SRP002535SAMN00014736SRR0546020.1474485060ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054602/SRR054602.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054602
73SRP002535SAMN00014736SRR0546030.1497622060ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054603/SRR054603.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054603
74SRP002535SAMN00014736SRR0546040.0635113480ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054604/SRR054604.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054604
75SRP002535SAMN00014736SRR0546050.0642605920ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054605/SRR054605.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054605
76SRP002535SAMN00014736SRR0546060.1040817480ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054606/SRR054606.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054606
77SRP002535SAMN00014736SRR0546070.1993529250ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054607/SRR054607.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054607
78SRP002535SAMN00014736SRR0546080.1784736990ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054608/SRR054608.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054608
79SRP002535SAMN00014736SRR0546090.2541912600ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054609/SRR054609.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054609
80SRP002535SAMN00014736SRR0546100.2304789240ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054610/SRR054610.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054610
81SRP002535SAMN00014736SRR0546110.2534484140ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054611/SRR054611.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054611
82SRP002535SAMN00014736SRR0546120.2611437370ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054612/SRR054612.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054612
83SRP002535SAMN00014736SRR0546130.1916179280ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054613/SRR054613.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054613
84SRP002535SAMN00014736SRR0546140.2269478710ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054614/SRR054614.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054614
85SRP002535SAMN00014736SRR0546150.2778561360ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054615/SRR054615.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054615
86SRP002535SAMN00014736SRR0546160.2700086180ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054616/SRR054616.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054616
87SRP002535SAMN00014736SRR0546180.2053421590ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054618/SRR054618.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054618
88SRP002535SAMN00014736SRR0546200.1932904780ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054620/SRR054620.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054620
89SRP002535SAMN00014736SRR0546220.0407526430ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054622/SRR054622.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054622
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91SRP002535SAMN00014736SRR0546320.1358609760ftp.sra.ebi.ac.uk/vol1/fastq/SRR054/SRR054632/SRR054632.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR054/SRR054632
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