SRP013494

See detailed project information

   Project:  SRP013494
   Organism:  Homo sapiens
   Study Title:  Single sperm whole genome sequencing
   Center Name:  Stanford University
   Description:  Single sperm whole genome sequencing for germline variation
   Cell Type:  notcancer-germ-sperm
   Median Sequencing Depth:  0.021743
   Publication:  Genome-Wide Single-Cell Analysis of Recombination Activity and de novo Mutation Rates in Human Sperm
   DOI:  10.1016/j.cell.2012.06.030

See including samples and runs (Click accession number in the table to see sample/run information)

   Number of samples:  36
   Number of runs:  52
   Number of single cell runs:  52
   
IDProject AccessionSample AccessionRun AccessionRaw DepthGenerated FASTQ Files
(Copy ftp address to download)		SRA Files
(Copy ftp address to download)
1SRP013494SAMN01036914SRR5044104.0011818910ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504410/SRR504410_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504410/SRR504410_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504410
2SRP013494SAMN01036914SRR5044114.5000263810ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504411/SRR504411_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504411/SRR504411_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504411
3SRP013494SAMN01036928SRR5044124.0605832170ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504412/SRR504412_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504412/SRR504412_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504412
4SRP013494SAMN01036928SRR5044134.2847892340ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504413/SRR504413_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504413/SRR504413_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504413
5SRP013494SAMN01036928SRR5044150.0218304950ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504415/SRR504415.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504415
6SRP013494SAMN01036914SRR5044160.0204881900ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504416/SRR504416.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504416
7SRP013494SAMN01036929SRR5044170.0215915280ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504417/SRR504417.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504417
8SRP013494SAMN01036929SRR5044184.2125800920ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504418/SRR504418_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504418/SRR504418_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504418
9SRP013494SAMN01036929SRR5044194.8823817350ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504419/SRR504419_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504419/SRR504419_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504419
10SRP013494SAMN01036930SRR5044200.0210805890ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504420/SRR504420.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504420
11SRP013494SAMN01036930SRR5044214.0237757040ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504421/SRR504421_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504421/SRR504421_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504421
12SRP013494SAMN01036930SRR5044224.2119072780ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504422/SRR504422_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504422/SRR504422_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504422
13SRP013494SAMN01036932SRR5044230.0221224980ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504423/SRR504423.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504423
14SRP013494SAMN01036933SRR5044240.0206963850ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504424/SRR504424.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504424
15SRP013494SAMN01036934SRR5044250.0215312870ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504425/SRR504425.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504425
16SRP013494SAMN01036935SRR5044260.0198490270ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504426/SRR504426.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504426
17SRP013494SAMN01036960SRR5046474.6269774520ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504647/SRR504647_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504647/SRR504647_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504647
18SRP013494SAMN01036960SRR5046602.9527635850ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504660/SRR504660_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504660/SRR504660_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504660
19SRP013494SAMN01036960SRR5046623.3536017210ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504662/SRR504662_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504662/SRR504662_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504662
20SRP013494SAMN01036961SRR5046646.6876781780ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504664/SRR504664_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504664/SRR504664_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504664
21SRP013494SAMN01036961SRR5046662.7408763430ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504666/SRR504666_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504666/SRR504666_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504666
22SRP013494SAMN01036961SRR5046673.0248613380ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504667/SRR504667_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504667/SRR504667_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504667
23SRP013494SAMN01036962SRR5046683.7913890840ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504668/SRR504668_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504668/SRR504668_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504668
24SRP013494SAMN01036962SRR5046693.0338900680ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504669/SRR504669_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504669/SRR504669_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504669
25SRP013494SAMN01036962SRR5046703.4747642680ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504670/SRR504670_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504670/SRR504670_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504670
26SRP013494SAMN01036963SRR5046716.6078777890ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504671/SRR504671_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504671/SRR504671_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504671
27SRP013494SAMN01036963SRR5046722.8050051340ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504672/SRR504672_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504672/SRR504672_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504672
28SRP013494SAMN01036963SRR5046733.1007032530ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504673/SRR504673_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504673/SRR504673_2.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504673
29SRP013494SAMN01036937SRR5047070.0216555280ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504707/SRR504707.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504707
30SRP013494SAMN01036940SRR5047080.0221247180ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504708/SRR504708.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504708
31SRP013494SAMN01036943SRR5047090.0226808420ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504709/SRR504709.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504709
32SRP013494SAMN01036944SRR5047100.0176665510ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504710/SRR504710.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504710
33SRP013494SAMN01036946SRR5047110.0230890320ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504711/SRR504711.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504711
34SRP013494SAMN01036947SRR5047120.0222028680ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504712/SRR504712.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504712
35SRP013494SAMN01036948SRR5047130.0202295020ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504713/SRR504713.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504713
36SRP013494SAMN01036949SRR5047140.0195639980ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504714/SRR504714.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504714
37SRP013494SAMN01036939SRR5047170.0199789650ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504717/SRR504717.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504717
38SRP013494SAMN01036941SRR5047180.0189472230ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504718/SRR504718.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504718
39SRP013494SAMN01036942SRR5047190.0197359560ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504719/SRR504719.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504719
40SRP013494SAMN01036950SRR5047200.0192427220ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504720/SRR504720.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504720
41SRP013494SAMN01036951SRR5047350.0210174070ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504735/SRR504735.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504735
42SRP013494SAMN01036952SRR5047360.0211770760ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504736/SRR504736.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504736
43SRP013494SAMN01036953SRR5047370.0208300230ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504737/SRR504737.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504737
44SRP013494SAMN01036954SRR5047380.0207513280ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504738/SRR504738.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504738
45SRP013494SAMN01036931SRR5047430.0163762390ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504743/SRR504743.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504743
46SRP013494SAMN01036936SRR5047450.0179559730ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504745/SRR504745.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504745
47SRP013494SAMN01036938SRR5047510.0171587490ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504751/SRR504751.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504751
48SRP013494SAMN01036955SRR5047520.0177638470ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504752/SRR504752.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504752
49SRP013494SAMN01036956SRR5047530.0189559390ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504753/SRR504753.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504753
50SRP013494SAMN01036957SRR5047540.0177277470ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504754/SRR504754.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504754
51SRP013494SAMN01036958SRR5047570.0172744980ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504757/SRR504757.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504757
52SRP013494SAMN01036959SRR5047580.0188444940ftp.sra.ebi.ac.uk/vol1/fastq/SRR504/SRR504758/SRR504758.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR504/SRR504758



For questions and suggestions, please contact: heshiyang@seu.edu.cn © HSCGD. State Key Laboratory of Digital Medical Engineering, Southeast University

苏ICP备2024124065号