SRP064210

See detailed project information

   Project:  SRP064210
   Organism:  Homo sapiens
   Study Title:  Single cell sequencing identifies clonal stasis and punctuated copy number evolution in triple negative breast cancer patients
   Center Name:  The UT MD Anderson Cancer Center
   Description:  We sequenced 1000 single cells from 12 triple negative breast cancer patients for copy number profilings. All samples were collected from primary tumors before treatments.
   Cell Type:  Breast cancer
   Median Sequencing Depth:  0.057213
   Publication:  Punctuated copy number evolution and clonal stasis in triple-negative breast cancer
   DOI:  10.1038/ng.3641

See including samples and runs (Click accession number in the table to see sample/run information)

   Number of samples:  14
   Number of runs:  971
   Number of single cell runs:  971
   
IDProject AccessionSample AccessionRun AccessionRaw DepthGenerated FASTQ Files
(Copy ftp address to download)		SRA Files
(Copy ftp address to download)
1SRP064210SAMN04381961SRR30805490.0703386240ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/009/SRR3080549/SRR3080549.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/009/SRR3080549
2SRP064210SAMN04381961SRR30805520.0636256230ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/002/SRR3080552/SRR3080552.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/002/SRR3080552
3SRP064210SAMN04381961SRR30805530.0615273200ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/003/SRR3080553/SRR3080553.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/003/SRR3080553
4SRP064210SAMN04381961SRR30805540.0856251480ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/004/SRR3080554/SRR3080554.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/004/SRR3080554
5SRP064210SAMN04381961SRR30805550.0622476770ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/005/SRR3080555/SRR3080555.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/005/SRR3080555
6SRP064210SAMN04381961SRR30806130.0779989900ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/003/SRR3080613/SRR3080613.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/003/SRR3080613
7SRP064210SAMN04381961SRR30806150.1128045150ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/005/SRR3080615/SRR3080615.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/005/SRR3080615
8SRP064210SAMN04381961SRR30806160.1405333440ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/006/SRR3080616/SRR3080616.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/006/SRR3080616
9SRP064210SAMN04381961SRR30806170.0593854190ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/007/SRR3080617/SRR3080617.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/007/SRR3080617
10SRP064210SAMN04381961SRR30806320.1152756710ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/002/SRR3080632/SRR3080632.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/002/SRR3080632
11SRP064210SAMN04381961SRR30806330.1362959620ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/003/SRR3080633/SRR3080633.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/003/SRR3080633
12SRP064210SAMN04381961SRR30806340.0739616460ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/004/SRR3080634/SRR3080634.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/004/SRR3080634
13SRP064210SAMN04381961SRR30806350.0768355370ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/005/SRR3080635/SRR3080635.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/005/SRR3080635
14SRP064210SAMN04381961SRR30806360.1431687580ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/006/SRR3080636/SRR3080636.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/006/SRR3080636
15SRP064210SAMN04381961SRR30806370.0621109880ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/007/SRR3080637/SRR3080637.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/007/SRR3080637
16SRP064210SAMN04381961SRR30806380.0742763080ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/008/SRR3080638/SRR3080638.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/008/SRR3080638
17SRP064210SAMN04381961SRR30806390.0747409580ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/009/SRR3080639/SRR3080639.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/009/SRR3080639
18SRP064210SAMN04381961SRR30806400.1180530480ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/000/SRR3080640/SRR3080640.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/000/SRR3080640
19SRP064210SAMN04381961SRR30806410.1269262680ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/001/SRR3080641/SRR3080641.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/001/SRR3080641
20SRP064210SAMN04381961SRR30806420.0847171490ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/002/SRR3080642/SRR3080642.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/002/SRR3080642
21SRP064210SAMN04381961SRR30806430.0353439090ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/003/SRR3080643/SRR3080643.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/003/SRR3080643
22SRP064210SAMN04381961SRR30806440.0333358060ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/004/SRR3080644/SRR3080644.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/004/SRR3080644
23SRP064210SAMN04381961SRR30806450.0326179700ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/005/SRR3080645/SRR3080645.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/005/SRR3080645
24SRP064210SAMN04381961SRR30806460.0355675610ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/006/SRR3080646/SRR3080646.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/006/SRR3080646
25SRP064210SAMN04381961SRR30806470.0328260330ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/007/SRR3080647/SRR3080647.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/007/SRR3080647
26SRP064210SAMN04381961SRR30806480.0324360880ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/008/SRR3080648/SRR3080648.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/008/SRR3080648
27SRP064210SAMN04381961SRR30806490.0284196060ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/009/SRR3080649/SRR3080649.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/009/SRR3080649
28SRP064210SAMN04381961SRR30806500.0326945940ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/000/SRR3080650/SRR3080650.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/000/SRR3080650
29SRP064210SAMN04381961SRR30806510.0290553830ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/001/SRR3080651/SRR3080651.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/001/SRR3080651
30SRP064210SAMN04381961SRR30806520.0336343480ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/002/SRR3080652/SRR3080652.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/002/SRR3080652
31SRP064210SAMN04381961SRR30806530.0281349870ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/003/SRR3080653/SRR3080653.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/003/SRR3080653
32SRP064210SAMN04381961SRR30806540.0349754040ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/004/SRR3080654/SRR3080654.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/004/SRR3080654
33SRP064210SAMN04381961SRR30806550.0406275970ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/005/SRR3080655/SRR3080655.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/005/SRR3080655
34SRP064210SAMN04381961SRR30806560.0337765650ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/006/SRR3080656/SRR3080656.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/006/SRR3080656
35SRP064210SAMN04381961SRR30806570.0330999200ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/007/SRR3080657/SRR3080657.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/007/SRR3080657
36SRP064210SAMN04381961SRR30806580.0281756240ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/008/SRR3080658/SRR3080658.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/008/SRR3080658
37SRP064210SAMN04381961SRR30806590.0332521970ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/009/SRR3080659/SRR3080659.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/009/SRR3080659
38SRP064210SAMN04381961SRR30806600.0338610760ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/000/SRR3080660/SRR3080660.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/000/SRR3080660
39SRP064210SAMN04381961SRR30806610.0337129850ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/001/SRR3080661/SRR3080661.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/001/SRR3080661
40SRP064210SAMN04381961SRR30806620.0320219960ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/002/SRR3080662/SRR3080662.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/002/SRR3080662
41SRP064210SAMN04381961SRR30806630.0321860230ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/003/SRR3080663/SRR3080663.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/003/SRR3080663
42SRP064210SAMN04381961SRR30806640.0336738050ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/004/SRR3080664/SRR3080664.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/004/SRR3080664
43SRP064210SAMN04381961SRR30806650.0292516510ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/005/SRR3080665/SRR3080665.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/005/SRR3080665
44SRP064210SAMN04381961SRR30806660.0338564500ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/006/SRR3080666/SRR3080666.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/006/SRR3080666
45SRP064210SAMN04381961SRR30806670.0384445050ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/007/SRR3080667/SRR3080667.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/007/SRR3080667
46SRP064210SAMN04381961SRR30806680.0400289180ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/008/SRR3080668/SRR3080668.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/008/SRR3080668
47SRP064210SAMN04381961SRR30806690.0378081730ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/009/SRR3080669/SRR3080669.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/009/SRR3080669
48SRP064210SAMN04381961SRR30806700.0370787020ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/000/SRR3080670/SRR3080670.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/000/SRR3080670
49SRP064210SAMN04381961SRR30806710.0341022590ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/001/SRR3080671/SRR3080671.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/001/SRR3080671
50SRP064210SAMN04381961SRR30806720.0335735900ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/002/SRR3080672/SRR3080672.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/002/SRR3080672
51SRP064210SAMN04381961SRR30806730.0349755650ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/003/SRR3080673/SRR3080673.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/003/SRR3080673
52SRP064210SAMN04381961SRR30806740.0193115630ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/004/SRR3080674/SRR3080674.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/004/SRR3080674
53SRP064210SAMN04381961SRR30806750.0358119590ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/005/SRR3080675/SRR3080675.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/005/SRR3080675
54SRP064210SAMN04381961SRR30806760.0259691030ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/006/SRR3080676/SRR3080676.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/006/SRR3080676
55SRP064210SAMN04381961SRR30806770.0338127610ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/007/SRR3080677/SRR3080677.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/007/SRR3080677
56SRP064210SAMN04381961SRR30806780.0331352370ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/008/SRR3080678/SRR3080678.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/008/SRR3080678
57SRP064210SAMN04381961SRR30806790.0318406000ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/009/SRR3080679/SRR3080679.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/009/SRR3080679
58SRP064210SAMN04381961SRR30806800.0318535060ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/000/SRR3080680/SRR3080680.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/000/SRR3080680
59SRP064210SAMN04381961SRR30806810.0306291330ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/001/SRR3080681/SRR3080681.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/001/SRR3080681
60SRP064210SAMN04381961SRR30806820.0308752660ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/002/SRR3080682/SRR3080682.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/002/SRR3080682
61SRP064210SAMN04381961SRR30806830.0289923580ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/003/SRR3080683/SRR3080683.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/003/SRR3080683
62SRP064210SAMN04381961SRR30806840.0283916900ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/004/SRR3080684/SRR3080684.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/004/SRR3080684
63SRP064210SAMN04381961SRR30806850.0267365270ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/005/SRR3080685/SRR3080685.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/005/SRR3080685
64SRP064210SAMN04381961SRR30806860.0256242120ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/006/SRR3080686/SRR3080686.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/006/SRR3080686
65SRP064210SAMN04381961SRR30806870.0553814500ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/007/SRR3080687/SRR3080687.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/007/SRR3080687
66SRP064210SAMN04381961SRR30806880.0598655650ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/008/SRR3080688/SRR3080688.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/008/SRR3080688
67SRP064210SAMN04381961SRR30806890.0702541360ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/009/SRR3080689/SRR3080689.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/009/SRR3080689
68SRP064210SAMN04381961SRR30806900.0565080120ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/000/SRR3080690/SRR3080690.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/000/SRR3080690
69SRP064210SAMN04381961SRR30806910.0602681620ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/001/SRR3080691/SRR3080691.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/001/SRR3080691
70SRP064210SAMN04381961SRR30806920.0647663860ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/002/SRR3080692/SRR3080692.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/002/SRR3080692
71SRP064210SAMN04381961SRR30806930.0640159610ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/003/SRR3080693/SRR3080693.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/003/SRR3080693
72SRP064210SAMN04381961SRR30806940.0491526880ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/004/SRR3080694/SRR3080694.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/004/SRR3080694
73SRP064210SAMN04381961SRR30806950.0645443760ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/005/SRR3080695/SRR3080695.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/005/SRR3080695
74SRP064210SAMN04381961SRR30806960.0473102540ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/006/SRR3080696/SRR3080696.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/006/SRR3080696
75SRP064210SAMN04381961SRR30806970.0453550700ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/007/SRR3080697/SRR3080697.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/007/SRR3080697
76SRP064210SAMN04381961SRR30806980.0701510300ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/008/SRR3080698/SRR3080698.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/008/SRR3080698
77SRP064210SAMN04381961SRR30806990.0509616770ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/009/SRR3080699/SRR3080699.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/009/SRR3080699
78SRP064210SAMN04381961SRR30807010.0615452900ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/001/SRR3080701/SRR3080701.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/001/SRR3080701
79SRP064210SAMN04381961SRR30807050.0458244150ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/005/SRR3080705/SRR3080705.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/005/SRR3080705
80SRP064210SAMN04381961SRR30807060.0458456700ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/006/SRR3080706/SRR3080706.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/006/SRR3080706
81SRP064210SAMN04381961SRR30807070.0483897970ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/007/SRR3080707/SRR3080707.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/007/SRR3080707
82SRP064210SAMN04381961SRR30807080.0518190480ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/008/SRR3080708/SRR3080708.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/008/SRR3080708
83SRP064210SAMN04381961SRR30807090.0507970030ftp.sra.ebi.ac.uk/vol1/fastq/SRR308/009/SRR3080709/SRR3080709.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR308/009/SRR3080709
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971SRP064210SAMN04381973SRR32126910.0635342880ftp.sra.ebi.ac.uk/vol1/fastq/SRR321/001/SRR3212691/SRR3212691.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR321/001/SRR3212691



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