SRP055057

See detailed project information

   Project:  SRP055057
   Organism:  Homo sapiens
   Study Title:  C_DOP_L method for single cell sequencing
   Center Name:  Memorial Sloan Kettering Cancer Center
   Description:  Technology Development - Single Cell CNV Profiling
   Cell Type:  Breast cancer
   Median Sequencing Depth:  0.044973
   Publication:  Optimizing sparse sequencing of single cells for highly multiplex copy number profiling
   DOI:  10.1101/gr.188060.114

See including samples and runs (Click accession number in the table to see sample/run information)

   Number of samples:  9
   Number of runs:  419
   Number of single cell runs:  419
   
IDProject AccessionSample AccessionRun AccessionRaw DepthGenerated FASTQ Files
(Copy ftp address to download)		SRA Files
(Copy ftp address to download)
1SRP055057SAMN03349616SRR18187350.0773048130ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/005/SRR1818735/SRR1818735.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/005/SRR1818735
2SRP055057SAMN03349616SRR18187360.0275308270ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/006/SRR1818736/SRR1818736.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/006/SRR1818736
3SRP055057SAMN03349616SRR18187370.0548326590ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/007/SRR1818737/SRR1818737.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/007/SRR1818737
4SRP055057SAMN03349616SRR18187380.0315775370ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/008/SRR1818738/SRR1818738.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/008/SRR1818738
5SRP055057SAMN03349616SRR18187390.0504312730ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/009/SRR1818739/SRR1818739.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/009/SRR1818739
6SRP055057SAMN03349616SRR18187400.0141031110ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/000/SRR1818740/SRR1818740.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/000/SRR1818740
7SRP055057SAMN03349616SRR18187410.0809374790ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/001/SRR1818741/SRR1818741.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/001/SRR1818741
8SRP055057SAMN03349616SRR18187420.0541533770ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/002/SRR1818742/SRR1818742.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/002/SRR1818742
9SRP055057SAMN03349616SRR18187430.0313153070ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/003/SRR1818743/SRR1818743.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/003/SRR1818743
10SRP055057SAMN03349616SRR18187440.0334767510ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/004/SRR1818744/SRR1818744.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/004/SRR1818744
11SRP055057SAMN03349616SRR18187450.0522399850ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/005/SRR1818745/SRR1818745.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/005/SRR1818745
12SRP055057SAMN03349616SRR18187460.0716461670ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/006/SRR1818746/SRR1818746.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/006/SRR1818746
13SRP055057SAMN03349616SRR18187470.0062602170ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/007/SRR1818747/SRR1818747.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/007/SRR1818747
14SRP055057SAMN03349616SRR18187480.0087717320ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/008/SRR1818748/SRR1818748.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/008/SRR1818748
15SRP055057SAMN03349616SRR18187490.0532247710ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/009/SRR1818749/SRR1818749.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/009/SRR1818749
16SRP055057SAMN03349616SRR18187500.0294696590ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/000/SRR1818750/SRR1818750.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/000/SRR1818750
17SRP055057SAMN03349616SRR18187510.0469203090ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/001/SRR1818751/SRR1818751.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/001/SRR1818751
18SRP055057SAMN03349616SRR18187520.0381048640ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/002/SRR1818752/SRR1818752.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/002/SRR1818752
19SRP055057SAMN03349616SRR18187530.0703466040ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/003/SRR1818753/SRR1818753.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/003/SRR1818753
20SRP055057SAMN03349616SRR18187540.0279064550ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/004/SRR1818754/SRR1818754.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/004/SRR1818754
21SRP055057SAMN03349616SRR18187550.0423720120ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/005/SRR1818755/SRR1818755.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/005/SRR1818755
22SRP055057SAMN03349616SRR18187560.0217090320ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/006/SRR1818756/SRR1818756.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/006/SRR1818756
23SRP055057SAMN03349616SRR18187570.0448875980ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/007/SRR1818757/SRR1818757.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/007/SRR1818757
24SRP055057SAMN03349616SRR18187580.0828353280ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/008/SRR1818758/SRR1818758.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/008/SRR1818758
25SRP055057SAMN03349616SRR18187590.0085462990ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/009/SRR1818759/SRR1818759.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/009/SRR1818759
26SRP055057SAMN03349616SRR18187600.0286382390ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/000/SRR1818760/SRR1818760.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/000/SRR1818760
27SRP055057SAMN03349616SRR18187610.0258870660ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/001/SRR1818761/SRR1818761.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/001/SRR1818761
28SRP055057SAMN03349616SRR18187620.0187876580ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/002/SRR1818762/SRR1818762.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/002/SRR1818762
29SRP055057SAMN03349616SRR18187630.0358955910ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/003/SRR1818763/SRR1818763.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/003/SRR1818763
30SRP055057SAMN03349616SRR18187640.0068052380ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/004/SRR1818764/SRR1818764.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/004/SRR1818764
31SRP055057SAMN03349616SRR18187650.0194194800ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/005/SRR1818765/SRR1818765.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/005/SRR1818765
32SRP055057SAMN03349616SRR18187660.0192731000ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/006/SRR1818766/SRR1818766.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/006/SRR1818766
33SRP055057SAMN03349616SRR18187670.0056799480ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/007/SRR1818767/SRR1818767.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/007/SRR1818767
34SRP055057SAMN03349616SRR18187680.0070347640ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/008/SRR1818768/SRR1818768.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/008/SRR1818768
35SRP055057SAMN03349616SRR18187690.0066107510ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/009/SRR1818769/SRR1818769.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/009/SRR1818769
36SRP055057SAMN03349616SRR18187700.0243750690ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/000/SRR1818770/SRR1818770.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/000/SRR1818770
37SRP055057SAMN03349616SRR18187710.0566401450ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/001/SRR1818771/SRR1818771.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/001/SRR1818771
38SRP055057SAMN03349616SRR18187720.0333242650ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/002/SRR1818772/SRR1818772.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/002/SRR1818772
39SRP055057SAMN03349616SRR18187730.0473839420ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/003/SRR1818773/SRR1818773.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/003/SRR1818773
40SRP055057SAMN03349616SRR18187740.0082759740ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/004/SRR1818774/SRR1818774.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/004/SRR1818774
41SRP055057SAMN03349616SRR18187750.0568368290ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/005/SRR1818775/SRR1818775.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/005/SRR1818775
42SRP055057SAMN03349616SRR18187760.0128747840ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/006/SRR1818776/SRR1818776.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/006/SRR1818776
43SRP055057SAMN03349616SRR18187770.0397725390ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/007/SRR1818777/SRR1818777.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/007/SRR1818777
44SRP055057SAMN03349616SRR18187780.0550094520ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/008/SRR1818778/SRR1818778.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/008/SRR1818778
45SRP055057SAMN03349616SRR18187790.0246203460ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/009/SRR1818779/SRR1818779.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/009/SRR1818779
46SRP055057SAMN03349616SRR18187800.0166217040ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/000/SRR1818780/SRR1818780.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/000/SRR1818780
47SRP055057SAMN03349616SRR18187810.0372047750ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/001/SRR1818781/SRR1818781.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/001/SRR1818781
48SRP055057SAMN03349616SRR18187820.0335172720ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/002/SRR1818782/SRR1818782.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/002/SRR1818782
49SRP055057SAMN03349616SRR18187830.0478187790ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/003/SRR1818783/SRR1818783.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/003/SRR1818783
50SRP055057SAMN03349616SRR18187840.0527366450ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/004/SRR1818784/SRR1818784.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/004/SRR1818784
51SRP055057SAMN03349616SRR18187850.0465924180ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/005/SRR1818785/SRR1818785.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/005/SRR1818785
52SRP055057SAMN03349616SRR18187860.0523628670ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/006/SRR1818786/SRR1818786.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/006/SRR1818786
53SRP055057SAMN03349616SRR18187870.0041148930ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/007/SRR1818787/SRR1818787.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/007/SRR1818787
54SRP055057SAMN03349616SRR18187880.0177427390ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/008/SRR1818788/SRR1818788.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/008/SRR1818788
55SRP055057SAMN03349616SRR18187890.0320922840ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/009/SRR1818789/SRR1818789.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/009/SRR1818789
56SRP055057SAMN03349616SRR18187900.0487621410ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/000/SRR1818790/SRR1818790.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/000/SRR1818790
57SRP055057SAMN03349616SRR18187910.0104058250ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/001/SRR1818791/SRR1818791.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/001/SRR1818791
58SRP055057SAMN03349616SRR18187920.0290962740ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/002/SRR1818792/SRR1818792.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/002/SRR1818792
59SRP055057SAMN03349616SRR18187930.0122563990ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/003/SRR1818793/SRR1818793.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/003/SRR1818793
60SRP055057SAMN03349616SRR18187940.0729075450ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/004/SRR1818794/SRR1818794.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/004/SRR1818794
61SRP055057SAMN03349616SRR18187950.0618297240ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/005/SRR1818795/SRR1818795.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/005/SRR1818795
62SRP055057SAMN03349616SRR18187960.0371873130ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/006/SRR1818796/SRR1818796.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/006/SRR1818796
63SRP055057SAMN03349616SRR18187970.0419649060ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/007/SRR1818797/SRR1818797.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/007/SRR1818797
64SRP055057SAMN03349616SRR18187980.0252071600ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/008/SRR1818798/SRR1818798.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/008/SRR1818798
65SRP055057SAMN03349616SRR18187990.0080187170ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/009/SRR1818799/SRR1818799.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/009/SRR1818799
66SRP055057SAMN03349616SRR18188000.0314488510ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/000/SRR1818800/SRR1818800.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/000/SRR1818800
67SRP055057SAMN03349616SRR18188010.0362113170ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/001/SRR1818801/SRR1818801.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/001/SRR1818801
68SRP055057SAMN03349616SRR18188020.0201547560ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/002/SRR1818802/SRR1818802.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/002/SRR1818802
69SRP055057SAMN03349616SRR18188030.0206289120ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/003/SRR1818803/SRR1818803.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/003/SRR1818803
70SRP055057SAMN03349616SRR18188040.0297327450ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/004/SRR1818804/SRR1818804.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/004/SRR1818804
71SRP055057SAMN03349616SRR18188050.0018101000ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/005/SRR1818805/SRR1818805.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/005/SRR1818805
72SRP055057SAMN03349616SRR18188060.0827066880ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/006/SRR1818806/SRR1818806.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/006/SRR1818806
73SRP055057SAMN03349616SRR18188070.0732593280ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/007/SRR1818807/SRR1818807.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/007/SRR1818807
74SRP055057SAMN03349616SRR18188080.0213282690ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/008/SRR1818808/SRR1818808.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/008/SRR1818808
75SRP055057SAMN03349616SRR18188090.0249564020ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/009/SRR1818809/SRR1818809.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/009/SRR1818809
76SRP055057SAMN03349616SRR18188100.0492556560ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/000/SRR1818810/SRR1818810.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/000/SRR1818810
77SRP055057SAMN03349616SRR18188110.0293678480ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/001/SRR1818811/SRR1818811.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/001/SRR1818811
78SRP055057SAMN03349616SRR18188120.0609630320ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/002/SRR1818812/SRR1818812.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/002/SRR1818812
79SRP055057SAMN03349616SRR18188130.0185031780ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/003/SRR1818813/SRR1818813.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/003/SRR1818813
80SRP055057SAMN03349616SRR18188140.0106226070ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/004/SRR1818814/SRR1818814.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/004/SRR1818814
81SRP055057SAMN03349616SRR18188150.0134944870ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/005/SRR1818815/SRR1818815.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/005/SRR1818815
82SRP055057SAMN03349616SRR18188160.0363621840ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/006/SRR1818816/SRR1818816.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/006/SRR1818816
83SRP055057SAMN03349616SRR18188170.0045390460ftp.sra.ebi.ac.uk/vol1/fastq/SRR181/007/SRR1818817/SRR1818817.fastq.gzftp.sra.ebi.ac.uk/vol1/srr/SRR181/007/SRR1818817
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